sl1p

The short read library 16S rRNA gene sequencing pipeline; sl1p automates the processing and analysis of paired-end 16S rRNA gene sequencing data.

PLCA

The plate coverage algorithm is designed to streamline culture-enriched metagenomic sequenc-ing of mixed communities based on amplicon sequencing data.

coinfinder

Coinfinder is software that will identify gene pairs which are statistically significantly more likely to either co-occur or avoid each other in pangenomes.